NestedAlign

Structures and sequences [?]

Please enter your first RNA sequence and structure here (supported formats: Dot-parentheses, BPSeq and CT):

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Please enter your second RNA sequence and structure here (supported formats: Dot-parentheses, BPSeq and CT):

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Parameters

1) Score for the deletion or the insertion of an unpaired base
2) Score for the conservation of an unpaired base
3) Score for the substitution of an unpaired base with an other
4) Score for the deletion or the insertion base pair
5) Score for the conservation of a base pair
6) Score for the substitution of a base in a base pair
7) Score for the total substitution of a base pair
8) Score for a pair splitting into two unpaired bases or the fusion of two unpaired bases into a base pair, without substitution
9) Score for a splitting or a fusion with a base substitution
10) Score for the scission or the fusion with two bases substitutions
11) Score for left or right alteration of a pair in an unpaired base or for left or right completion of an unpaired in a base pair, without substitution
12) Score for the alteration or completion with substitution

...or upload a file :

Please select your full matrix file here:

Other options

Display ellapsed time
Display results' graphical representation using VARNA

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